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Home Recipes Paleo

Paleo Pumpkin Muffins with Streusel

5 /5
GF Gluten Free GR Grain Free DF Dairy Free P Paleo V Vegetarian
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By: Noelle Tarr, NTP, CPT16 Comments Posted: 11/9/20 Updated: 11/5/21

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These paleo pumpkin muffins are perfectly moist, packed with pumpkin flavor, and topped with a golden streusel and maple icing. They’re soft, pumpkin spicy, and slightly sweet, which makes them the ultimate warm and cozy fall treat or breakfast.

A single paleo pumpkin muffin with a crumb topping and icing being drizzled on top.

Who’s ready to pumpkin spice it up? These paleo pumpkin muffins with streusel topping are perfect for fall baking. They’re an incredible way to enjoy all that baking with pumpkin has to offer.

Personally, I really enjoy pumpkin year-round and make my paleo pumpkin bread regularly! So when fall hits, I like to kick it up a notch. My streusel topping does exactly that, and gives these muffins a sweet and crispy texture. The maple icing is optional, but it’s totally a show stopper.

This recipe is made with a combo of almond flour, cassava flour, and tapioca flour. While three flours is a little extra, it’s what makes these super light and moist. You will notice a huge difference in texture from other muffins made with just almond flour.

If you’re new to baking with cassava flour, you can easily get Otto’s Cassava Flour online or in most grocery stores. Looking for other ways to use cassava flour? Check out my Paleo Banana Chocolate Chip Muffins and Paleo Chicken Tenders.

A muffin on a plate with a fork next to it.

Jump to:

  • Ingredient Notes
  • Substitutions
  • How to Paleo Pumpkin Muffins
  • Topping and Icing
  • Recipe FAQs
  • Baking Tips
  • Storage and Freezing
  • More Pumpkin Recipes
  • Paleo Pumpkin Muffins
  • Leave a Review!

Ingredient Notes

Here are a few tips about some of the ingredients in this recipe:

  • Cassava flour – Cassava flour is made by grating and drying the fibrous cassava root. It’s available in most grocery stores and is a great substitute for wheat flour! It’s the secret to the light and fluffy texture of the muffins.
  • Blanched almond flour – I recommend using a fine almond flour for the best texture.
  • Tapioca flour – While you only need a small amount, this is the secret ingredient that makes the topping nice and crisp.
  • Eggs – Make sure to lay these out about an hour ahead of time to bring them to room temperature.
  • Ghee – Ghee is butter with all the milk solids removed. You can use coconut oil as well!
  • Pumpkin puree – Make sure to get pure pumpkin puree, not pumpkin pie filling!
  • Coconut sugar – This adds a nice maple-sweet taste.
  • Powdered sugar – For strict paleo, make your own powdered sugar from coconut sugar. You can also get an organic powdered sugar.
  • Coconut milk – You can use canned or coconut milk in a carton.

Substitutions

Cassava Flour – I’ve successfully swap this for gluten free baking flour, specifically Bob’s Red Mill 1:1 Gluten Free Baking Flour. You can also swap this for almond flour.
Almond flour – You can use another nut flour, like cashew flour.
Tapioca flour – Swap this for arrowroot flour, but note that the texture will change slightly.
Maple syrup – Raw honey is a great substitute.
Coconut sugar – You can swap this for any granulated sugar, including brown sugar. Check out the best coconut sugar substitutes for more info.
Ghee – Use unsalted butter instead. Just make sure it’s soft and room temperature.

How to Paleo Pumpkin Muffins

  1. Prep: Preheat the oven to 350°F. Line a muffin tin with parchment paper liners.
  2. For the streusel: Whisk the coconut sugar, tapioca flour, almond flour, and cinnamon together in a medium bowl. Add the ghee, and mix everything together with a fork until crumbs form (don’t over-mix). Set the streusel aside so it can harden slightly.
  3. For the muffins: In a large bowl, whisk the cassava flour, almond flour, baking soda, pumpkin pie spice, and salt together. Fold in the eggs, ghee, pumpkin, maple syrup, and vanilla extract, and stir until combined.
  4. Transfer: Transfer the batter to the prepared muffin tin, filling each slot about ⅔ full. Slightly flatten the batter of each muffin if necessary. Using your fingers, crumble the streusel evenly on top of the muffins. Lightly press the streusel into the muffins so it sticks.
  5. Bake: Bake the muffins for 20-22 minutes, or until a toothpick comes out clean. 
  6. For the maple glaze: Combine the powdered sugar, maple syrup and coconut milk in a small bowl. Let the muffins cool for 10-15 minutes prior to adding the glaze. 

Topping and Icing

The top of the muffin with crumb topping and a maple glaze.

This streusel topping is what sets these paleo muffins apart from the rest. It’s made with coconut sugar, tapioca flour, almond flour, and ghee, and has a nice kick of cinnamon. You need to make the streusel topping before you begin working on the muffins because the streusel needs to sit for at least 20 minutes to firm up.

To make the maple icing paleo, you can make your own powdered sugar from coconut sugar. Just add 1/2 cup coconut sugar and 1/2 tablespoons tapioca flour to a high speed blender or food processor and process for 1-2 minutes. Then, add it into the recipe as instructed below.

Recipe FAQs

Do I have to add the streusel topping?

You can skip the golden streusel topping and/or the maple icing altogether. These pumpkin muffins are great on their own, or you can sprinkle the tops of the muffins with a little chocolate chips, chopped nuts, or coconut flakes before baking.

Can I add chocolate chips to the muffins?

Yep! Just fold in about 1/2 cup chocolate chips into the batter before baking.

Is pumpkin puree the same thing as pure pumpkin?

Sure is! Both are 100% pumpkin and nothing else. When looking for canned pumpkin, make sure to not confuse it with pumpkin pie filling, which has added sugar and seasoning.

Three paleo pumpkin muffins stacked on top of each other.

Baking Tips

  • Make the streusel first. The streusel mixture needs to sit for at least 20 minutes to firm up.
  • You can completely eliminate the streusel and maple icing and bake the muffins plain.
  • Fold in 1/2 cup chocolate chips for paleo chocolate chip pumpkin muffins.
  • If you’re making these ahead of time, don’t add the maple glaze until just before serving.

Storage and Freezing

TO STORE: Once the muffins have cooled, store them in an airtight container at room temperature for up to 3 days. You can also store them in the refrigerator for up to 7 days.

TO FREEZE: These muffins freeze well and are great for meal prep! lasts up to 3 months. Just freeze sliced or whole. To freeze, place the muffins in a freezer-safe storage bag. Store them in the freezer for up to 3 months. Do not add the maple glaze before freezing.

TO THAW: When you’re ready to have a muffin, just lay it out to thaw for a few hours at room temperature.

A pumpkin muffin cooling on a wire rack.

More Pumpkin Recipes

  • Paleo Pumpkin Bread
  • Paleo Pumpkin Blondies
  • 4-Ingredient Vegan Caramel Sauce
  • Paleo Chocolate Banana Bread
  • Paleo Magic Cookie Bars

Did you make this? Be sure to leave a review below and tag me on Instagram, Facebook or Pinterest!

Recipe
5 Stars 4 Stars 3 Stars 2 Stars 1 Star 5 from 10 reviews

Paleo Pumpkin Muffins

These paleo pumpkin muffins are perfectly moist, packed with pumpkin flavor, and topped with a golden streusel and maple icing. They’re soft, pumpkin spicy, and slightly sweet, which makes them the ultimate warm and cozy fall treat or breakfast.

Prep: 20Cook: 22Total: 42 minutes
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Ingredients

Streusel topping:

  • ⅓ cup coconut sugar 
  • ⅓ cup tapioca flour 
  • ⅓ cup almond flour
  • 1 teaspoon cinnamon
  • ¼ cup ghee or coconut oil, melted

Pumpkin muffins:

  • 1 cup cassava flour or gluten free baking flour blend (not paleo)
  • ½ cup blanched almond flour
  • 1 teaspoon baking soda
  • 1 ½ tablespoons pumpkin pie spice
  • 1 teaspoon sea salt
  • 3 large eggs, room temperature 
  • ¼ cup ghee or coconut oil, melted
  • 1 cup pure pumpkin puree 
  • ½ cup pure maple syrup
  • 1 teaspoon vanilla extract

Maple glaze (optional):

  • ½ cup organic powdered sugar
  • 2 teaspoons maple syrup
  • 1 tablespoon coconut milk

Instructions

  1. Prep: Preheat the oven to 350°F. Line a muffin tin with parchment paper liners.
  2. For the streusel: Whisk the coconut sugar, tapioca flour, almond flour, and cinnamon together in a medium bowl. Add the ghee, and mix everything together with a fork until crumbs form (don’t over-mix). Set the streusel aside so it can harden slightly.
  3. For the muffins: In a large bowl, whisk the cassava flour, almond flour, baking soda, pumpkin pie spice, and salt together. Fold in the eggs, ghee, pumpkin, maple syrup, and vanilla extract, and stir until combined.
  4. Transfer: Transfer the batter to the prepared muffin tin, filling each slot about ⅔ full. Slightly flatten the batter of each muffin if necessary. Using your fingers, crumble the streusel evenly on top of the muffins. Lightly press the streusel into the muffins so it sticks.
  5. Bake: Bake the muffins for 20-22 minutes, or until a toothpick comes out clean. 
  6. For the maple glaze: Combine the powdered sugar, maple syrup, and coconut milk in a small bowl. Let the muffins cool for 10-15 minutes prior to adding the glaze. 

Notes

  1. The streusel topping is totally optional. You can bake the pumpkin muffins without it. 
  2. Don’t have cassava flour on hand? Just swap it for a 1:1 gluten free baking flour.
  3. This recipe was slightly tweaked and updated in October 2022 to make it easier to make with pumpkin pie spice. Here is the original recipe. 
© Coconuts & Kettlebells
Recipe By: Noelle Tarr, NTP, CPT

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Noelle Tarr, NTP, CPT

I’m Noelle, a Nutritional Therapy Practitioner, personal trainer, author, and podcaster. I love helping people improve their physical and mental health with easy to understand health and nutrition articles, and simple, delicious recipes made with nourishing ingredients. Pull up a seat, you’re welcome at this table!

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  1. pauline falck says

    Posted on 11/15/20 at 4:41 PM

    These are sooooo good! I made them today, exactly as the recipe says. The recipe is easy to follow, the smells coming from the spices is intoxicating, and the outcome is amazing!!! I used fresh pumpkin (cooked and pureed). I will be making these muffins again!! Thank you, Noelle!

    Reply
    • Noelle Tarr, NTP, CPT says

      Posted on 11/16/20 at 12:48 PM

      AWESOME! Thank you for sharing that with me. So glad you loved it!

  2. JenniferStephen says

    Posted on 11/17/20 at 4:30 AM

    Delicious cake without getting fed up. Thanks

    Reply
  3. BelindaCarney says

    Posted on 11/24/20 at 10:17 PM

    Farorite foods of my childrents in the morning is this cake. It’s so AWESOME ^^. Thanks for share.

    Reply
    • Noelle Tarr, NTP, CPT says

      Posted on 11/27/20 at 10:06 AM

      Whohooo!! So glad you loved them! Thanks for sharing.

  4. Hannah L says

    Posted on 10/12/21 at 10:27 AM

    Could you use oat flour in place of the almond flour?

    Reply
    • Noelle Tarr, NTP, CPT says

      Posted on 10/14/21 at 7:02 AM

      Hi Hannah! I haven’t tried this one personally—but I do know that you can make the swap and it would likely work! Let me know how it goes!

  5. Becca says

    Posted on 12/5/21 at 8:51 AM

    We’ve made this recipe several times, substituting honey for maple syrup, and the muffins come out perfectly every time.

    Reply
    • Noelle Tarr, NTP, CPT says

      Posted on 12/6/21 at 2:52 PM

      Thanks for sharing Becca—good to know the sub works out perfectly. 🙂

  6. Tiffany Trithardt says

    Posted on 12/29/21 at 11:01 PM

    Sooooo good! The perfect amount of pumpkin, great texture and that frosting on top is just right! These didnt last long in our house!!

    Reply
    • Noelle Tarr, NTP, CPT says

      Posted on 1/1/22 at 8:39 AM

      Yesss… love that these have a good pumpkin flavor! So glad your family loves them!

  7. Becca says

    Posted on 3/4/22 at 8:26 AM

    One of my favorite muffin recipes! It comes out perfectly every time. The flavor is excellent and I make it without the streusel topping. If you’re looking for a simple and safe gluten free delicious muffin recipe, this is the one!

    Reply
    • Noelle Tarr, NTP, CPT says

      Posted on 3/4/22 at 11:30 AM

      So so glad you love these paleo pumpkin muffins even without the topping! I agree… they’re great too without it!

  8. Jenn C. says

    Posted on 10/14/23 at 1:30 AM

    Best pumpkin muffins EVER! I took it a step further and added cream cheese filling. The streusel was DELISH and I also threw in some chopped pecans and pepitas for added crunch. NO ONE COULD TELL it was gluten and dairy free!!! Thanks for an amazing recipe!

    Reply
  9. Kalle Culotta says

    Posted on 11/5/25 at 8:19 AM

    These are amazing!🤩 So moist… melt in your mouth.

    Reply
    • Noelle Tarr, NTP, CPT says

      Posted on 11/5/25 at 9:22 AM

      So glad you loved them! Thanks for sharing, Kalle!

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Welcome

I’m Noelle, a Nutritional Therapy Practitioner, personal trainer, author, and podcaster. I love helping people improve their physical and mental health with easy to understand health articles, and delicious recipes made with nourishing ingredients. Pull up a seat, you’re welcome at this table! Read more...

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Recipe Key

GF Gluten Free GR Grain Free DF Dairy Free EF Egg Free LC Low Carb NF Nut Free P Paleo V Vegetarian

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